PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010448m
Common NameCICLE_v10010448mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 271aa    MW: 29872.6 Da    PI: 7.242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010448mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002289111123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Ciclev10010448m  89 FSCNYCQRKFYSSQALGGHQNAH 111
                      89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-686116No hitNo description
PROSITE profilePS5015711.42789116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESLSKDPSP SEASSIISTP EENKVGDHEE EAKATLSFDL NLDRSDSDDQ GFNQELNLID  60
SLNNTGSSSQ ISSETPHATN DHPSEQRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR  120
GQRIGTYTAA SPFAFGQPYL HQNHYSSISS LPLHGAAYNR SLGIQVHSMI HKPSHTSTSH  180
GNGNIYGHNN WSRPPIEQQP AIGRLSSMEN YYSTAAAATS SRRFSLVRNM MGSSSQVDHG  240
ATRNYWWENG GGGLKNNQEE MKKLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450313.10.0hypothetical protein CICLE_v10010448mg
RefseqXP_006483451.10.0PREDICTED: zinc finger protein 3-like
TrEMBLV4TSL20.0V4TSL2_9R
STRINGVIT_04s0008g05930.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-55C2H2 family protein